PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003923G0110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 261aa    MW: 28895.2 Da    PI: 4.9271
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003923G0110genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-164997355
              AP2  3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr+++ +gr+ AeIr  +     r +r +lg+f+taeeAa++++a   +l+g
  PH01003923G0110 49 FRGVRRRE-WGRYSAEIRNpW-----RrTREWLGTFDTAEEAARQYDAEVIRLHG 97
                     8****999.**********88.....55**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.3212450IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-62445IPR001471AP2/ERF domain
PRINTSPR003678.3E-92536IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1848105IPR016177DNA-binding domain
PROSITE profilePS5103220.91648105IPR001471AP2/ERF domain
SMARTSM003805.2E-2248111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2448106IPR001471AP2/ERF domain
CDDcd000182.01E-2248104No hitNo description
PRINTSPR003678.3E-97187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MNSKAKARVK KVVGEGPWTQ FRAQFRGVRR REWGRYSAEI RNPWRRMQFR GVRRREWGRY  60
SAEIRNPWRR TREWLGTFDT AEEAARQYDA EVIRLHGARI ITNFKKPAAA AANAGDAPLP  120
TPPSKSAPSG GASYDSSEES SHPAPSPTSV LQSFPPFAIS ASEPAKKPPP QPVPPPPATP  180
QEIAEAGGYF QLEDLTGDPD PIYGDQDLLN DFPELPALDF LSDNVLPELQ LDDLGAGLSP  240
TGWQQVDEFL IDLDFTDLEA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-1348104562ATERF1
3gcc_A9e-1348104562ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.14e-43PREDICTED: ethylene-responsive transcription factor CRF1-like
STRINGLOC_Os01g12440.11e-41(Oryza sativa Japonica Group)
STRINGORGLA01G0069400.12e-41(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-20ethylene responsive element binding factor 4